AlphaFold is an AI program designed as a deep learning system developed by DeepMind, a subsidiary of Alphabet, which performs predictions of protein structure.
AlphaFold is available on the Karolina cluster. For the current list of installed versions, use:
ml av alphafold
AlphaFold needs multiple genetic databases to run.
These can be downloaded using AlphaFold scripts located in the
This step requires the
aria2c program available as the
Once downloaded, you must specify the path to the directory on
/scratch containing the databases.
For more information, see the AlphaFold documentation.