X Window System

The X Window system is a principal way to get GUI access to the clusters. The X Window System (commonly known as X11, based on its current major version being 11, or shortened to simply X, and sometimes informally X-Windows) is a computer software system and network protocol that provides a basis for graphical user interfaces (GUIs) and rich input device capability for networked computers.

Tip

The X display forwarding must be activated and the X server running on client side

X Display

Linux Example

In order to display the GUI of various software tools, you need to enable the X display forwarding. On Linux and Mac, log in using the -X option in the SSH client:

 local $ ssh -X username@cluster-name.it4i.cz

PuTTY on Windows

On Windows, use the PuTTY client to enable X11 forwarding. In PuTTY menu, go to Connection-SSH-X11, mark the Enable X11 forwarding checkbox before logging in.

Then log in as usual.

WSL (Bash on Windows)

In order to display the GUI of various software tools, you need to enable the X display forwarding. Log in using the -X option in the SSH client:

 local $ ssh -X username@cluster-name.it4i.cz

Tip

If you are getting the "cannot open display" error message, try to export the DISPLAY variable, before attempting to log in:

 local $ export DISPLAY=localhost:0.0

Verify the Forwarding

To verify the forwarding, type:

$ echo $DISPLAY

if you receive something like:

localhost:10.0

then the X11 forwarding is enabled.

X Server

In order to display the GUI of various software tools, you need a running X server on your desktop computer. For Linux users, no action is required as the X server is the default GUI environment on most Linux distributions. Mac and Windows users need to install and run the X server on their workstations.

X Server on OS X

Mac OS users need to install XQuartz server.

X Server on Windows

There is a variety of X servers available for the Windows environment. The commercial Xwin32 is very stable and feature-rich. The Cygwin environment provides fully featured open-source XWin X server. For simplicity, we recommend the open-source X server by the Xming project. For stability and full features, we recommend the XWin X server by Cygwin

How to use Xwin How to use Xming
Install Cygwin. Find and execute XWin.exe to start the X server on Windows desktop computer. If unable to forward X11 using PuTTY to CygwinX Use Xlaunch to configure Xming. Run Xming to start the X server on a Windows desktop computer.

Read more here.

Running GUI Enabled Applications

Note

Make sure that X forwarding is activated and the X server is running.

Then launch the application as usual. Use the & to run the application in background:

$ ml intel (idb and gvim not installed yet)
$ gvim &
$ xterm

In this example, we activate the Intel programing environment tools and then start the graphical gvim editor.

GUI Applications on Compute Nodes

Allocate the compute nodes using -X option on the qsub command:

$ qsub -q qexp -l select=2:ncpus=24 -X -I

In this example, we allocate 2 nodes via qexp queue, interactively. We request X11 forwarding with the -X option. It will be possible to run the GUI enabled applications directly on the first compute node.

For better performance, log on the allocated compute node via SSH, using the -X option.

$ ssh -X r24u35n680

In this example, we log on the r24u35n680 compute node, with the X11 forwarding enabled.

Gnome GUI Environment

The Gnome 2.28 GUI environment is available on the clusters. We recommend using a separate X server window for displaying the Gnome environment.

Gnome on Linux and OS X

To run the remote Gnome session in a window on a Linux/OS X computer, you need to install Xephyr. Ubuntu package is xserver-xephyr, on OS X it is part of XQuartz. First, launch Xephyr on local machine:

local $ Xephyr -ac -screen 1024x768 -br -reset -terminate :1 &

This will open a new X window of size 1024x768 at DISPLAY :1. Next, connect via SSH to the cluster with the DISPLAY environment variable set and launch a gnome-session:

local $ DISPLAY=:1.0 ssh -XC yourname@cluster-name.it4i.cz -i ~/.ssh/path_to_your_key
... cluster-name MOTD...
yourname@login1.cluster-namen.it4i.cz $ gnome-session &

On older systems where Xephyr is not available, you may also try Xnest instead of Xephyr. Another option is to launch a new X server in a separate console via:

xinit /usr/bin/ssh -XT -i .ssh/path_to_your_key yourname@cluster-namen.it4i.cz gnome-session -- :1 vt12

However, this method does not seem to work with recent Linux distributions and you will need to manually source /etc/profile to properly set environment variables for PBS.

Gnome on Windows

Use XLaunch to start the Xming server or run the XWin.exe. Select the "One window" mode.

Log in to the cluster using PuTTY or Bash on Windows. On the cluster, run the gnome-session command.

$ gnome-session &

This way, we run a remote gnome session on the cluster, displaying it in the local X server.

Use System-Log Out to close the gnome-session.

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